遠藤論文に入手経路が書かれている。
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Raw sequencing data from the original RNA-seq experiments examined in this study were downloaded from the short read archive (SRA) at NCBI. The accession number of the project is SRP038104. Genome sequences of mouse (version 38, mm10) obtained from B6 mouse strain were downloaded from NCBI GenBank and encoded into a bowtie database using the bowtie-build (for colored space fastq files) or bowtie2-build (for fastq files) program. The accession numbers (i.e., SRA ID) of the RNA-seq experiments are listed in Table S1 (Supporting Information), and the checksums of archived sequences were confirmed by Dr Teruhiko Wakayama, Yamanashi University, one of the corresponding authors of the original paper.
TSさんの<mergeするとカバレージ倍増。>というのは以下の説明だね。
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Merged BAM File
A set of BAM files can now be loaded merged into a single track. If each file contains different Sample or Read Group tags, as specified in the SAM/BAM file format, then the merged track can be sorted by these to differentiate the origins of reads to these files within a single track.
Create a text file containing a list of the BAM files you want to load, listed by either file path or URL. IGV will load all the BAM files as a single track.
This file must be in plain text format with .txt extension. Rich text format will cause an error.
For older versions of IGV, be sure there is not an extra line at the bottom of the list. This causes an error.
If IGV gives an error "Error loading.... Cannot find reader for alignment file" see here.
Required Extension: .bam.list
